CDS

Accession Number TCMCG016C06403
gbkey CDS
Protein Id OMO92169.1
Location complement(join(22672..22928,23036..23168,23342..23923,25118..25354,26266..26560,26646..27101,27177..28135,28265..28465,28546..28611,28922..29047,29218..29610,29704..29885,29970..30106,30491..30954,31092..31553,31707..31968,32162..32302,32423..32603,32780..33119,33245..33458,33700..33892,34055..34404,34523..34597,34685..34895,34979..35182,35997..36179,36670..36776,37249..37322,37453..37531,38324..38368,38938..39095,39425..39547,39654..39722))
Organism Corchorus capsularis
locus_tag CCACVL1_06908

Protein

Length 2652aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01008233.1
Definition Down-regulated-in-metastasis protein [Corchorus capsularis]
Locus_tag CCACVL1_06908

EGGNOG-MAPPER Annotation

COG_category V
Description Small subunit processome component 20 homolog
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K14772        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs -

Sequence

CDS:  
ATGGCAACACCGGCGCATGCTCAAGCTGTCAAGTCTCTCAATAAATCTCCTGGCCGCAAGCGCTTTGTTTTCAAGACGTTCTCTCAGAGAATAGAGGATATTGATATTAATGTATTTCGGAGCCTTGATAAAATCAAGTCAGAGCCCTCTGAAGGTTCATCATTCCTTCGGGATTGCCTTATCGAGTGGAGGGAATTGAATACTGCGGAGGATTTCATTTCATTTTATGCGGAAACAATGCCTTTTGTACAGACTTTACCATTGGTACTCTTGCACAAGGAATTAATATTTACTAAACTTATATCCAGACTGCAAATGAAAGCTAGATTATCCCTGGAGCCTTTACTCAGGTTGTTGGCAGCCTTCTCTAGAGATCTTCTTGAAGATTTTATCCTCTTCCTGCCTAGGATCGTTGATTCGTTAGTCTCTCTCCTGAAAAATGGTGCCGATAGGGAGCCAGAGATCATTGAGCAGATATTCACTTCATGGTCATATATCATGATGCATTTGCAGAAGTATCTCAGACGGGACATCATACATGTTCTCAAGGTTACAGTAAGATTAAGATATTACCCAAAGGATTATGTCCAAGAGTTTTTGGCAGAGGCTACATCATTCTTGCTGCGGAATGCACCTGTTGAGCAACTTATAAAAGGTATTAGAAAGACCATGTTTGAGGTTGTGAAGAAACCACTACCAACACGGAAGTCTGGAGTTAGTGCTTTGTTATGTTATGTTATGTTAGGAACCTCATCGAGGTTCCATTCAGGAGCAGAGAGAGTTTTGCGTTTATTGGTGGACAATTCAATATTTGCTATTGGTGATAAGTTTCCTGAAGGTGCAGATGCTATTCTTGAAGTTGTCATTGCTTCCTTTCAAAAGATATCTGAGGAGCTAGAACCCAGTGAGTTAACTCTGATGTGGGAGTGCTTGTATCAGGAAATAAATGACTCTGAAGCTAGCGGATCCTTCCTGCATTTAAGTCGACTTTTATCGCTCCTTATATCTGCTGTTCAGGTTAATAGTGAATGTAATGTTTCTGATTATCAACAAATGCTTAAAGTTGTGGGGTCCTTGGTGCAAAAAACTATGTTGCCTTCTAGAAAAGGAAACGATAGTTTGCATGAAGTCATTGATAAGGTTTTGCAACTGATGCTACATATTCTTGATGGACTCCACGGTTCTAATAGTTTGTCATCCATCTCTGGCTGTTTGTTCCAGTGGGCTCCTGTGTTTGAGTTAAGGGATTCAAGTTTGTTGACTTTTCTTAGAGAACTTCTGCTGAAGGACCCCTCTGTGATACATATTTTTAGTGATTATATTCTAAGTGCTATAAATGATCTGGTGGAATATTCACAAGAAGAAGTTTTATGCTTGTTACTGTCTTTCATTGAGAGACTGCAAATGCACCCTCAAAGCTCTGAATTTGTAGATGGAATATCTGAAGGGAGACTTTCCAAGATACGTGACTATATGCAAGGGGTTATTAGTAACTTGATCAGGCTTGTAAATGATATTGTAATCGGGACTACATTACCTACTCAAATTGATGAGGCCAAGTTGGCTATATGGTGGGGAGTTGTAAGCTGTTATCCATATATGTTTGATGCCAAAGCAAATGAATCTATGTTGATGGAGTTGTTAGATGCACTTCAGAGGCTTCTGATGATTGAAGATGAAAATATAGCTGGTGTTTCCAAAAACACTTGGGAAAGCCTAGTTGGTGCTGCCTTGGGTTCTTATAACAAATGGCATAATGCAAAAGATCTTGGGTTTGGAGAAATGAGCAAAGTATTACATCTTGCCAAGGCTTGCAAATCATCTTCTCAAGTCTTGTTTGCTGCCGCTGATTACTTGGATAATGTGAACGGGCCTGCATTTCAAGCAGACAGTGGGAAGAAAATATATCATCCTGCGCTTAAAGGAGAGAATACTGTTGATGCACTTGGTCACTTTGCTGATAATTTGTGCCACTCAGATAAGGGGATTCGTCTTCCAACTCTAAGAATTTTGTGCCATTATGAGCCTCTCACTTGTAAAATATCTGCCGAGGATCTGCCCGCAGAGAAGAAAATAAAAACAGATGTTCTTCAGCTCTTGCTGTCTATTGAGGCTACTCCCCTTTCAATATCTAGCAGTAGGAAAGTTACCTTATTGATATCTAGAATACAGATGGGCCTCTCTGCTGGAAGGATAGCTGAAACATATGTACCTCTCGTTTTGAGGGGGATACTTGGCATCTTCCATAATCGTTTTAGCTATCTATGGGAAGCAGCTTCTGAGTGCCTTGCAGTTCTGATTAGCAAGCATGCTGGACTTGTCTGGGATAAATTTATTACATATTTTGAGGAATGTCAATCTGTGGTTCACTCTTCTGATATACAACTTTACCAACTAAATGCAAATTTATCTAACACATCTAGTGATCTTGTAAGGCAATTCAATTTGTTTGTTAAGCCTGAATCTGATAAGACACCAGGCAGATCAGTTTTAACCTTGTTGCTTCAATCTTTACAAAAGATTCCTTCTGTTGCTGAATCTCGGTCCCGTCAAGTTATACCTTTATTTTTAAGGTTTCTGGGCTATGATAGTGATAATCTTGTGAGTGTGCAATCATTTAATTCAGACATTCGTGAAGGAAAGGAGTGGAAGGCTATCCTTAAAGAATGGCTGAGCTTGTTGAAACTGATGCGGAACCCTAGATCATTCTATCGAAGTCAATTCCTAAAAGATGTTCTGCAAAATAGGCTTTTAGATGAAATTGATGCTGAAATACAGGCGAGGGTTCTTGATTGCCTATTATTGTGGAAAGATGATTTCTTGATTCCATATGATCAGCATCTGAAAAATCTAATCAATCCAAAATATCTGAGAGAAGAACTAACAACATGGAATTTATCTAAAGAGTCTGGTCTACTTGAAGAAAGCCATAGGGTTAATCTTGTGCCTATAGTCATTCACCTCCTGATACCAAAAATCAGAAACCTGAAAACGCTTGCTTCTCGGAAGCATGCAAGTGTACATCTCCGAAAGGCAGTTCTTGGATTCATAGCTCAACTTGATGTTCATGAGCTCCCTCTTTTCTTTGCTTTGTTATTAAAGCCCTTGCAGATTACATCAAAAGACGATCTTTGTGCTTCTAACTTGTATCAGAACTTGCCAATTAGTTCTATTGAAGAATTTCATGCACTAAATTATCTAAAATATTTCACTCTGGAAAATATAACTGCACTGTCCTGGAAGAAAAAATATGGTTTTCTGCATGTAGTTGAAGATGTTCTAGGTGTTTTCGATGAATTTCATGTCAAACCTTTTCTTGATCTATTAATGGGATGTGTTGTACGGGTATTAGCAAGCTGTAGTTCAAGTATTGACAGTGCCAGAATTGCCGAATCCTCTCTTATAAAAAATCATCCTGGTGTTGAGTTGGTTTCTGATGACGAAGACAGTGCAGAGGCAAATCATGTGCAGACTGGCATGGCCATCAAGCAGTTCAAAGATTTGAGGTCTCTATGTCTGAAAATTGTTGCTTTTGTTCTCAATAAATACGAGGACCATGATTTTGGTTGCCAATTCTGGGACCTGTGTTTTACATCTCTGAAACCCTTAATTCATGGTTTCAAACAGGAGGGTTCTAGCAGTGAAAAACCGAGTTCCCTGTTCTCTTGCTTTTTGGCTATGAGTCGAAGCCACCAACTGGTGCCCCTATTGTGTAGAGAAAGGAATCTTGTTCCTGATATATTTTCTATTTTAACTGTCCCAACTGCTTCAGAAGCTATTATATCCTGTGTTCTGAAGTTTATATCAAACCTGCTTGAACTTGAAATTGAGTTGGATGATGAAAAGAGTCCTATCAAGAGTGTGATTTATTCAAACCTAGAAGCACTTGTCTGCAGCTTGCATCATCTTTTTCAGAATGATAGTGCATCTAAGAGAAAACTTGTCAGATGTCCCGGAGAAACAGAAATTAGAATTTTCAGATTGTTATCGAAGTACATAAAGGATTTATTGCTGGCAACAAAATTTGTTGATATCCTACTACCATTCTTGTCAAAGAGGGTCCAAAGTTCTGATATCTGTCTTGAAGCCATACAAGTTGTTCGAGATATCATACCTGTAGTAGGGACTGGAAGGACCACTGATATACTTAATGCAGTTGCTCCACTTCTCATATCCGTTAAACTGGATATTCGGGTGTCTATTTGTGATCTTCTTGAAGTGCTTGCTAGAACTGATGCTTCTGTAGTCGTGGTGGCTAGATATGTAAGACAATTGAATGCAAACTCTGCTTTTGAATTGGATGAGCTTGATTATGATGCAATAGGCAAGGCATATGAGGAGATTGGGATGGGATTCTTTCATGCTTCACCAGTGGAGCATGCATTACTCATTTTGTCACAATGTGTTTATGATATGTCATCAGAAGAGCTAATCTTAAGGCATCATGCTTATGGGTTGTTGCTTAAGTTTCTTGAATTTTCTGCCAAAATTCTTGACCAAGAGGTTACAAATCACCATGAAACTGCTGAAGAGATGATGGTAGATGAAAAAGGCTGTTGGACAAGAGCAAGCATTCAGCGTATTATTAACAAGTTCCTTTTAAAGCATATGGGAAATGCTATTATCCAAGGGATTTCTGCGAGAAAGGAATGGATTGATTTACTACGAGAGATGGTGATAAAGCTTCCACAATTAGGAAATATAAATCTGTTGAGAGCTTTGTGCTCTGAAGATGCTGATCAAGATTTTTTCAACAATATCATTCATCTACAGAAACATAAGAAAGCCAAGGCTTTGTCTCGCTTTGCAGATGTTATAAGTAAAAGCAATATGTCTAAGGATATCATAAATAAAGTGTTCATCCCACTCTTTTTCAACATGTTGTTCGATTTACAACATGGGAAGGATGAGCATGTTAGATCTGCATGCATACGAGCACTTGCTTCAGTTTCTGCTAAGATGGAATGGAAGTCATACTATGCATTACTGCTTCGTTGCTTTAGGGAGATGAGTTTGAAGCCAGAGAAGCAGAAGGTTCTCAAAGGTTGTGATTCTATTATGGTTGCTGAGATACAGACCTGTCTTCAAAAGACTGTGCTGCCAAAGATACAAGACTTGATGAATTCTGATTCGGATAATGTCAATGTTACCATCAGTCTTGCAGCACTGAAGCTTCTAAAGCTACTTCCAGGAGATATAATGGAGTCCCAGCTTTCTAGCATCATTCACCGCATTTCAAACTTTCTTAAGAATCGCCTTGAAAGTATTCGTGATGAAGCTAGATCTGCATTGGCTGAATGTCTGAAGGAGCTTGGATTCGAATATCTGCAGTTTATAGTTCGTGTTTTGCGAGCAACCTTAAAACGGGGATTTATGCAGCATGTTCTGGGATACACACTTCATTTTATATTGTCAAAGACTATATCAGAGTCTGCTTATGGGAGTTTAGATTATTGTTTAGAAGATCTCCTCTCTGTGGTGGAGAATGATATTCTTGGTGATGTTGCTGAAGAGAAGGAGGTGGAGAAGATTGCTTCTAAAATGAAAGAAACTAGAAAGTGCAAATCTTTTGAAACCCTCAAATTGATTGCCCAAAGTGTAACATTCAAAATGCATGCATTAAAACTTCTATCTCCTGTTACAACTCACTTGCAAAAGCATCTCACGCCGAAAGTGAAATCAAAATTGGAGAATATATTAAGGCACATAGCAGATGGTATTGAGTGCAATCCATCTGTTAATCAGACTGATCTGTTCGTCTTTGTATATGGTCTCATAGCAGATGGAACAAATGAAGAAAATGGGTTAGGTGTGGATGCTTCAGCTACAGAGGCAAACAAGCATGGCAACCTTCTCAAGGAGAAAACTGTTCCTTCAGGCCATGCTTTTGGAACTAAGTCTGCATGTTCACATCTTATTACTGTTTTTGCCTTGGGGGTTTTGCAGAATAGGATAAAAAGCATGAAATTAGACAAAAATGATGAAGAACTGTTATCCATATGTCTTACTCCAATAGTAAGGCTGCCTCTGCCCTCCCTGGAATCACATGCAGATAAATTGAAGGTGACACTGTTGAATGTTGCACAAGGATCAGTAAACCCTGGCAATCCTCTTATGCAGTCATGTCTGAAATTGTTAACAGTGCTTTTGCGAAGCACAAAAATCACATTATCCTCGGATCAGTTACATTTGTTAGTCCAGTTTCCTGTGTTTGTTGATCTTGAAAGGAATCCCTCTTTTGTTGCCCTATCACTTCTAAAGGCAATTGTTAACCGCAAGCTAGTTGTTCATGAGATCTATGATATTGTAGTTCAAGTCGCAGAATTGATGGTAACAAGTCAGGTGGAACCGATTCGCAAGAAATGCAGTCAAATTTTGTTGCAATTCTTACTTGATTATCATCTTTCGGAGAAACGCTTGCAGCAACATCTAGATTTTCTGCTTGCAAATCTAAGGTATGAGCATCCAACAGGGAGAGAATCTGTGCTTGAAATGCTCCATGCAATTATGAAGAAATTTCCAAAAAGCATTTTGGATGAGCAGTCACAGACTATATTTGTCCATCTGGTGGTTTGCTTGGCTAATGATCAGGATAGTGAAGTCCGGTCAATGACTGGTGCAGCCATAAAGCTCCTTATTAAACGTATAAGCCAAGATCATATAAGCCAACATTCACTGAATTCCATTCTTGAGTACAGCCTGTCTTGGTACTTGGGTAAGAAGCAGCAATTATGGAGTGCAGGTGCACAGGTATTGGGATTAGTGATTGAGGTCATGAAGAATAGTTTTCAAAGGCATATTATAAGTAGCATATTGCCAGTGACTAAGAGTATTTTGCGCTCTGCTATCGATGCTTTTACCCACACGCAGATGGATCTTTCTGATGAATATACTATCCCTTTTTGGAAAGAGGCATATTATTCACTAGTTATGTTGGAGAAGATGCTGAACCAGTTCTGTGATTTAAGCTTAGAGAGGGATCTTGAGGATGTATGGGAAATGATCTGTGAGTTGCTATTGCATCCGCATTCCTGGCTTCGCAATGTATCAAATCGCCTCCTTGCCTTGTATTTTACTCGTGTGAATGAGGTTGGAAGAGGAAGTATTGAGAAGTCATATGGAACTTTATTCCTTATAACACCAAGTAGACTTTTTACGATAGCTGTTTCTCTTTGCTGCCAACTGAAAACACCTATTAGTGATGATGAGGCTGCATCAAAGAATGCAAGGCTCTCTGCTAAGAAGGAAAAGGAAAAGAACCATTATTATCGGAGCGGCCTGATCACAAAAAATCTTGTGTTTGCAATTTGTGGTCTGAACTCCTTGATGAGAGAGTGGGCTGGTACAGAAAATACAAAGTTCTGGTCTACCCTTGAACAGTGTGAGCAGGATCGTTTTCTTAAAGCTTTTCAGATGCTCAATTCAAGAAAAGCAACAGGAATGCTCTTGTCTATTACCGGCGCCACACATCAAAATGATACTGACCATTCTGAGGGCCTTCAGTATCTTCTTGTCTCCAACTTGCTTAAGGAGCTGGGCAAGCTTGCCCTTCAAATGGAGGCTATTCAGATGAGGATTGTCTTCAATAGTTTCCAAGGGATTTTACCAGAAATCAGTCAGGATGATTCCCGACATTATGCATCGCAAATGATTTTGCCTTTATATAAAGTTTGTGAAGGGTTTGCTGGAAAAATCATCACTGATGATCTAAAGCTATTAGCACAAGAAGTTTTGGATAGCATACGGAACACTTTAGGCAGCCAAGATTTTGGACAAGTTTACAATGAGATCAAGAAGAAACTGAAATCAAAGAGGGATAAGAGGAAGCGAGAGGAGAAGCGTATGGCTGTTATAAACCCTGAGCGCAACGCGAAGAGGAAGTTGAGGATTGCAGCCAAGCATCGTGCCAACAAGAAAAGGAAGATAATGGCCATGAGATTGGAAAGATGGATGCATTGA
Protein:  
MATPAHAQAVKSLNKSPGRKRFVFKTFSQRIEDIDINVFRSLDKIKSEPSEGSSFLRDCLIEWRELNTAEDFISFYAETMPFVQTLPLVLLHKELIFTKLISRLQMKARLSLEPLLRLLAAFSRDLLEDFILFLPRIVDSLVSLLKNGADREPEIIEQIFTSWSYIMMHLQKYLRRDIIHVLKVTVRLRYYPKDYVQEFLAEATSFLLRNAPVEQLIKGIRKTMFEVVKKPLPTRKSGVSALLCYVMLGTSSRFHSGAERVLRLLVDNSIFAIGDKFPEGADAILEVVIASFQKISEELEPSELTLMWECLYQEINDSEASGSFLHLSRLLSLLISAVQVNSECNVSDYQQMLKVVGSLVQKTMLPSRKGNDSLHEVIDKVLQLMLHILDGLHGSNSLSSISGCLFQWAPVFELRDSSLLTFLRELLLKDPSVIHIFSDYILSAINDLVEYSQEEVLCLLLSFIERLQMHPQSSEFVDGISEGRLSKIRDYMQGVISNLIRLVNDIVIGTTLPTQIDEAKLAIWWGVVSCYPYMFDAKANESMLMELLDALQRLLMIEDENIAGVSKNTWESLVGAALGSYNKWHNAKDLGFGEMSKVLHLAKACKSSSQVLFAAADYLDNVNGPAFQADSGKKIYHPALKGENTVDALGHFADNLCHSDKGIRLPTLRILCHYEPLTCKISAEDLPAEKKIKTDVLQLLLSIEATPLSISSSRKVTLLISRIQMGLSAGRIAETYVPLVLRGILGIFHNRFSYLWEAASECLAVLISKHAGLVWDKFITYFEECQSVVHSSDIQLYQLNANLSNTSSDLVRQFNLFVKPESDKTPGRSVLTLLLQSLQKIPSVAESRSRQVIPLFLRFLGYDSDNLVSVQSFNSDIREGKEWKAILKEWLSLLKLMRNPRSFYRSQFLKDVLQNRLLDEIDAEIQARVLDCLLLWKDDFLIPYDQHLKNLINPKYLREELTTWNLSKESGLLEESHRVNLVPIVIHLLIPKIRNLKTLASRKHASVHLRKAVLGFIAQLDVHELPLFFALLLKPLQITSKDDLCASNLYQNLPISSIEEFHALNYLKYFTLENITALSWKKKYGFLHVVEDVLGVFDEFHVKPFLDLLMGCVVRVLASCSSSIDSARIAESSLIKNHPGVELVSDDEDSAEANHVQTGMAIKQFKDLRSLCLKIVAFVLNKYEDHDFGCQFWDLCFTSLKPLIHGFKQEGSSSEKPSSLFSCFLAMSRSHQLVPLLCRERNLVPDIFSILTVPTASEAIISCVLKFISNLLELEIELDDEKSPIKSVIYSNLEALVCSLHHLFQNDSASKRKLVRCPGETEIRIFRLLSKYIKDLLLATKFVDILLPFLSKRVQSSDICLEAIQVVRDIIPVVGTGRTTDILNAVAPLLISVKLDIRVSICDLLEVLARTDASVVVVARYVRQLNANSAFELDELDYDAIGKAYEEIGMGFFHASPVEHALLILSQCVYDMSSEELILRHHAYGLLLKFLEFSAKILDQEVTNHHETAEEMMVDEKGCWTRASIQRIINKFLLKHMGNAIIQGISARKEWIDLLREMVIKLPQLGNINLLRALCSEDADQDFFNNIIHLQKHKKAKALSRFADVISKSNMSKDIINKVFIPLFFNMLFDLQHGKDEHVRSACIRALASVSAKMEWKSYYALLLRCFREMSLKPEKQKVLKGCDSIMVAEIQTCLQKTVLPKIQDLMNSDSDNVNVTISLAALKLLKLLPGDIMESQLSSIIHRISNFLKNRLESIRDEARSALAECLKELGFEYLQFIVRVLRATLKRGFMQHVLGYTLHFILSKTISESAYGSLDYCLEDLLSVVENDILGDVAEEKEVEKIASKMKETRKCKSFETLKLIAQSVTFKMHALKLLSPVTTHLQKHLTPKVKSKLENILRHIADGIECNPSVNQTDLFVFVYGLIADGTNEENGLGVDASATEANKHGNLLKEKTVPSGHAFGTKSACSHLITVFALGVLQNRIKSMKLDKNDEELLSICLTPIVRLPLPSLESHADKLKVTLLNVAQGSVNPGNPLMQSCLKLLTVLLRSTKITLSSDQLHLLVQFPVFVDLERNPSFVALSLLKAIVNRKLVVHEIYDIVVQVAELMVTSQVEPIRKKCSQILLQFLLDYHLSEKRLQQHLDFLLANLRYEHPTGRESVLEMLHAIMKKFPKSILDEQSQTIFVHLVVCLANDQDSEVRSMTGAAIKLLIKRISQDHISQHSLNSILEYSLSWYLGKKQQLWSAGAQVLGLVIEVMKNSFQRHIISSILPVTKSILRSAIDAFTHTQMDLSDEYTIPFWKEAYYSLVMLEKMLNQFCDLSLERDLEDVWEMICELLLHPHSWLRNVSNRLLALYFTRVNEVGRGSIEKSYGTLFLITPSRLFTIAVSLCCQLKTPISDDEAASKNARLSAKKEKEKNHYYRSGLITKNLVFAICGLNSLMREWAGTENTKFWSTLEQCEQDRFLKAFQMLNSRKATGMLLSITGATHQNDTDHSEGLQYLLVSNLLKELGKLALQMEAIQMRIVFNSFQGILPEISQDDSRHYASQMILPLYKVCEGFAGKIITDDLKLLAQEVLDSIRNTLGSQDFGQVYNEIKKKLKSKRDKRKREEKRMAVINPERNAKRKLRIAAKHRANKKRKIMAMRLERWMH